pyCOMPASS
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A
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B
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C
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D
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E
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G
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I
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M
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O
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P
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R
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S
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U
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V
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W
A
add_biological_features() (pycompass.module.Module method)
,
[1]
add_sample_sets() (pycompass.module.Module method)
,
[1]
Annotation (class in pycompass.annotation)
,
[1]
B
BiologicalFeature (class in pycompass.biological_feature)
,
[1]
by() (pycompass.biological_feature.BiologicalFeature method)
,
[1]
(pycompass.sample.Sample method)
,
[1]
(pycompass.sample_set.SampleSet method)
,
[1]
C
Compendium (class in pycompass.compendium)
,
[1]
Connect (class in pycompass.connect)
,
[1]
create() (pycompass.module.Module method)
,
[1]
D
describe_compendia() (pycompass.connect.Connect method)
,
[1]
difference() (pycompass.module.Module static method)
,
[1]
E
Experiment (class in pycompass.experiment)
,
[1]
G
get() (pycompass.biological_feature.BiologicalFeature method)
,
[1]
(pycompass.experiment.Experiment method)
,
[1]
(pycompass.ontology.Ontology method)
,
[1]
(pycompass.platform.Platform method)
,
[1]
(pycompass.sample.Sample method)
,
[1]
(pycompass.sample_set.SampleSet method)
,
[1]
get_biofeature_reporters() (pycompass.raw_data.RawData method)
,
[1]
get_biofeatures() (pycompass.raw_data.RawData method)
,
[1]
get_compass_version() (pycompass.connect.Connect method)
,
[1]
get_compendium() (pycompass.connect.Connect method)
,
[1]
get_data_sources() (pycompass.compendium.Compendium method)
,
[1]
get_description() (pycompass.module.Module method)
,
[1]
get_enrichment() (pycompass.module.Module method)
,
[1]
get_platform_types() (pycompass.compendium.Compendium method)
,
[1]
get_score_rank_methods() (pycompass.compendium.Compendium method)
,
[1]
get_triples() (pycompass.annotation.Annotation method)
,
[1]
get_value_types() (pycompass.raw_data.RawData method)
,
[1]
get_values() (pycompass.raw_data.RawData method)
,
[1]
I
intersection() (pycompass.module.Module static method)
,
[1]
M
Module (class in pycompass.module)
,
[1]
O
Ontology (class in pycompass.ontology)
,
[1]
P
Platform (class in pycompass.platform)
,
[1]
Plot (class in pycompass.plot)
,
[1]
plot_distribution() (pycompass.plot.Plot method)
,
[1]
plot_heatmap() (pycompass.plot.Plot method)
,
[1]
plot_network() (pycompass.annotation.Annotation method)
,
[1]
(pycompass.plot.Plot method)
,
[1]
pycompass.annotation (module)
pycompass.biological_feature (module)
pycompass.compendium (module)
pycompass.connect (module)
pycompass.experiment (module)
pycompass.module (module)
pycompass.ontology (module)
pycompass.platform (module)
pycompass.plot (module)
pycompass.raw_data (module)
pycompass.sample (module)
pycompass.sample_set (module)
R
rank_biological_features() (pycompass.compendium.Compendium method)
,
[1]
rank_sample_sets() (pycompass.compendium.Compendium method)
,
[1]
RawData (class in pycompass.raw_data)
,
[1]
read_from_file() (pycompass.module.Module static method)
,
[1]
remove_biological_features() (pycompass.module.Module method)
,
[1]
remove_sample_sets() (pycompass.module.Module method)
,
[1]
S
Sample (class in pycompass.sample)
,
[1]
SampleSet (class in pycompass.sample_set)
,
[1]
split_module_by_biological_features() (pycompass.module.Module method)
,
[1]
split_module_by_sample_sets() (pycompass.module.Module method)
,
[1]
structure (pycompass.ontology.Ontology attribute)
,
[1]
U
union() (pycompass.module.Module static method)
,
[1]
V
values (pycompass.module.Module attribute)
,
[1]
W
write_to_file() (pycompass.module.Module method)
,
[1]
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